MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.27110042157840764
cnr3.905090118907503
efc0.5565787974481277
fber113.46627044677734
fwhmavg3.97313
fwhmx3.86914
fwhmy4.20129
fwhmz3.84896
icvscsf0.17765229157214638
icvsgm0.48526206112127673
icvswm0.33708564730657686
inumed1.0088005065917969
inurange0.34144969284534465
qi10.0
qi20.0009181533497098257
rpvecsf34.74577818618369
rpvegm14.878929297856068
rpvewm23.703110252373264
sizex180
sizey256
sizez256
snrcsf2.9086555843404107
snrgm11.215550048101234
snrtotal8.850082598707754
snrwm12.426042163681618
snrdcsf17.730828764405867
snrdgm32.368803308862965
snrdtotal34.21848318353821
snrdwm52.5558174773458
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.190120257760623
summarybgmad12.46565055847168
summarybgmean46.607276916503906
summarybgmedian45.2818489074707
summarybgn2820778.0
summarybgp0527.717484760284425
summarybgp9570.17282829284667
summarybgstdv13.524575233459473
summarycsfk-0.08558664131262139
summarycsfmad133.17227172851562
summarycsfmean335.89349365234375
summarycsfmedian337.37451171875
summarycsfn8130.0
summarycsfp05165.00285415649415
summarycsfp95520.2882080078125
summarycsfstdv115.98271179199219
summarygmk0.2974048370978224
summarygmmad53.359249114990234
summarygmmean615.2473754882812
summarygmmedian615.8995361328125
summarygmn35148.0
summarygmp05524.0131347656251
summarygmp95703.4973205566406
summarygmstdv54.914005279541016
summarywmk0.8653066081587006
summarywmmad50.77306365966797
summarywmmean977.0411987304688
summarywmmedian1000.00927734375
summarywmn137194.0
summarywmp05797.7406311035156
summarywmp951067.6231018066405
summarywmstdv80.47660064697266
tpmoverlapcsf0.19953598082065582
tpmoverlapgm0.5333942770957947
tpmoverlapwm0.5276904702186584
wm2max0.6040153664567998

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumbba136da040309268975891d18af08a9
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.