MRIQC: individual T1w report

Summary

Subject ID: 028_ExercisePre.
Date and time: 2018-05-06, 22:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.27110042157840764
cnr			3.905090118907503
efc			0.5565787974481277
fber			113.46627044677734
fwhm	avg		3.97313
fwhm	x		3.86914
fwhm	y		4.20129
fwhm	z		3.84896
icvs	csf		0.17765229157214638
icvs	gm		0.48526206112127673
icvs	wm		0.33708564730657686
inu	med		1.0088005065917969
inu	range		0.34144969284534465
qi	1		0.0
qi	2		0.0009181533497098257
rpve	csf		34.74577818618369
rpve	gm		14.878929297856068
rpve	wm		23.703110252373264
size	x		180
size	y		256
size	z		256
snr	csf		2.9086555843404107
snr	gm		11.215550048101234
snr	total		8.850082598707754
snr	wm		12.426042163681618
snrd	csf		17.730828764405867
snrd	gm		32.368803308862965
snrd	total		34.21848318353821
snrd	wm		52.5558174773458
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.190120257760623
summary	bg	mad	12.46565055847168
summary	bg	mean	46.607276916503906
summary	bg	median	45.2818489074707
summary	bg	n	2820778.0
summary	bg	p05	27.717484760284425
summary	bg	p95	70.17282829284667
summary	bg	stdv	13.524575233459473
summary	csf	k	-0.08558664131262139
summary	csf	mad	133.17227172851562
summary	csf	mean	335.89349365234375
summary	csf	median	337.37451171875
summary	csf	n	8130.0
summary	csf	p05	165.00285415649415
summary	csf	p95	520.2882080078125
summary	csf	stdv	115.98271179199219
summary	gm	k	0.2974048370978224
summary	gm	mad	53.359249114990234
summary	gm	mean	615.2473754882812
summary	gm	median	615.8995361328125
summary	gm	n	35148.0
summary	gm	p05	524.0131347656251
summary	gm	p95	703.4973205566406
summary	gm	stdv	54.914005279541016
summary	wm	k	0.8653066081587006
summary	wm	mad	50.77306365966797
summary	wm	mean	977.0411987304688
summary	wm	median	1000.00927734375
summary	wm	n	137194.0
summary	wm	p05	797.7406311035156
summary	wm	p95	1067.6231018066405
summary	wm	stdv	80.47660064697266
tpm	overlap	csf	0.19953598082065582
tpm	overlap	gm	0.5333942770957947
tpm	overlap	wm	0.5276904702186584
wm2max			0.6040153664567998

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	bba136da040309268975891d18af08a9
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.